利用python求一段DNA序列的互补序列

代码如下:

 1 complement = {'A':'T','G':'C','C':'G','T':'A'}
 2 rev_seq = ''
 3 with open(r'D:\Rosalind\haha.txt','w+') as f1:
 4     with open(r'D:\Rosalind\rosalind_revc.txt','r') as f:
 5         dna_seq = f.read()
 6         dna_seq = list(dna_seq.strip())
 7         for i in dna_seq:
 8             rev_seq += complement[i]
 9             
10     rev_seq = rev_seq[::-1]
11             
12             
13     print (rev_seq,file = f1)

这是将从一个txt文件中导入序列,然后将互补后的结果输出到另外一个文件中。

如果一个段序列不长,直接中python交互式界面完成感觉更方便

先定义的一个字典: complement = {'C': 'G', 'G': 'C', 'T': 'A', 'A': 'T'}

然后 for i in list(seq):

    rev_dna += complement[i]

    rev_dna = rev_dna[::-1]

  print (rev_dna)

直接得到互补后的结果。